History:STAGE:Deep Layers    

Developmental Stage: Neural Diff

Average behavior of each cluster (grey) included in this stage (average in red). Click line to view cluster details.

Associated Clusters

Gene Ontology Associations

This stage is associated with 197 GO categories. Scroll to view the whole list.

  1. adult behavior
  2. adult walking behavior
  3. anatomical structure development
  4. anatomical structure formation involved in morphogenesis
  5. anatomical structure morphogenesis
  6. anterior/posterior pattern specification
  7. appendage development
  8. appendage morphogenesis
  9. aromatic compound biosynthetic process
  10. axon guidance
  11. axonogenesis
  12. behavioral defense response
  13. behavioral fear response
  14. brain development
  15. calcium-dependent cell-cell adhesion
  16. camera-type eye development
  17. camera-type eye morphogenesis
  18. cell development
  19. cell differentiation
  20. cell differentiation in hindbrain
  21. cell fate commitment
  22. cell morphogenesis
  23. cell morphogenesis involved in differentiation
  24. cell morphogenesis involved in neuron differentiation
  25. cell part morphogenesis
  26. cell projection assembly
  27. cell projection morphogenesis
  28. cell projection organization
  29. cell-cell adhesion
  30. cell-cell signaling
  31. cellular component assembly involved in morphogenesis
  32. cellular component morphogenesis
  33. cellular developmental process
  34. cellular macromolecule biosynthetic process
  35. cellular nitrogen compound biosynthetic process
  36. central nervous system development
  37. central nervous system neuron differentiation
  38. cerebellar cortex formation
  39. cerebellar cortex morphogenesis
  40. cerebellum development
  41. cerebellum morphogenesis
  42. cerebral cortex development
  43. chondrocyte differentiation
  44. chordate embryonic development
  45. cilium assembly
  46. cilium morphogenesis
  47. cognition
  48. dendrite development
  49. dentate gyrus development
  50. developmental process
  51. dorsal/ventral pattern formation
  52. ear development
  53. ear morphogenesis
  54. embryo development
  55. embryo development ending in birth or egg hatching
  56. embryonic appendage morphogenesis
  57. embryonic limb morphogenesis
  58. embryonic morphogenesis
  59. embryonic organ development
  60. embryonic organ morphogenesis
  61. eye development
  62. eye morphogenesis
  63. fear response
  64. forebrain development
  65. forebrain generation of neurons
  66. forebrain neuron differentiation
  67. forebrain regionalization
  68. generation of neurons
  69. glycolipid metabolic process
  70. glycosphingolipid metabolic process
  71. heart development
  72. heart morphogenesis
  73. heterocycle biosynthetic process
  74. hindbrain development
  75. hindbrain morphogenesis
  76. homophilic cell adhesion
  77. inner ear development
  78. inner ear morphogenesis
  79. kidney development
  80. lens induction in camera-type eye
  81. limb development
  82. limb morphogenesis
  83. locomotory behavior
  84. macromolecule biosynthetic process
  85. mesenchymal cell development
  86. mesenchymal cell differentiation
  87. mesenchyme development
  88. metencephalon development
  89. midbrain development
  90. morphogenesis of embryonic epithelium
  91. multicellular organismal development
  92. multicellular organismal process
  93. multicellular organismal signaling
  94. negative regulation of cell development
  95. negative regulation of cell differentiation
  96. negative regulation of cell migration
  97. negative regulation of cellular macromolecule biosynthetic process
  98. negative regulation of developmental process
  99. negative regulation of gene expression
  100. negative regulation of glial cell differentiation
  101. negative regulation of locomotion
  102. negative regulation of neurogenesis
  103. negative regulation of neuron differentiation
  104. negative regulation of nitrogen compound metabolic process
  105. negative regulation of nucleobase-containing compound metabolic process
  106. negative regulation of osteoblast differentiation
  107. negative regulation of RNA metabolic process
  108. negative regulation of transcription from RNA polymerase II promoter
  109. negative regulation of transcription, DNA-dependent
  110. nephron epithelium development
  111. nephron morphogenesis
  112. nervous system development
  113. neural precursor cell proliferation
  114. neural tube development
  115. neural tube patterning
  116. neurogenesis
  117. neurological system process
  118. neuromuscular process
  119. neuron development
  120. neuron differentiation
  121. neuron fate commitment
  122. neuron projection development
  123. neuron projection morphogenesis
  124. neuron-neuron synaptic transmission
  125. non-canonical Wnt receptor signaling pathway
  126. nucleobase-containing compound biosynthetic process
  127. organ development
  128. organ morphogenesis
  129. organic cyclic compound biosynthetic process
  130. osteoblast differentiation
  131. palate development
  132. pallium development
  133. pattern specification process
  134. positive regulation of cell differentiation
  135. positive regulation of developmental process
  136. positive regulation of gene expression
  137. positive regulation of neuron differentiation
  138. positive regulation of transcription, DNA-dependent
  139. regionalization
  140. regulation of biosynthetic process
  141. regulation of catecholamine uptake involved in synaptic transmission
  142. regulation of cell development
  143. regulation of cell differentiation
  144. regulation of cell morphogenesis involved in differentiation
  145. regulation of cell projection organization
  146. regulation of cellular biosynthetic process
  147. regulation of cellular macromolecule biosynthetic process
  148. regulation of cellular metabolic process
  149. regulation of cellular process
  150. regulation of chondrocyte differentiation
  151. regulation of developmental process
  152. regulation of dopamine uptake involved in synaptic transmission
  153. regulation of excitatory postsynaptic membrane potential
  154. regulation of gene expression
  155. regulation of inhibitory postsynaptic membrane potential
  156. regulation of macromolecule biosynthetic process
  157. regulation of macromolecule metabolic process
  158. regulation of metabolic process
  159. regulation of multicellular organismal development
  160. regulation of multicellular organismal process
  161. regulation of nervous system development
  162. regulation of neural precursor cell proliferation
  163. regulation of neurogenesis
  164. regulation of neurological system process
  165. regulation of neuron differentiation
  166. regulation of neuron projection development
  167. regulation of nitrogen compound metabolic process
  168. regulation of nucleobase-containing compound metabolic process
  169. regulation of osteoblast differentiation
  170. regulation of postsynaptic membrane potential
  171. regulation of primary metabolic process
  172. regulation of RNA biosynthetic process
  173. regulation of RNA metabolic process
  174. regulation of smoothened signaling pathway
  175. regulation of synaptic transmission
  176. regulation of synaptic transmission, glutamatergic
  177. regulation of transcription from RNA polymerase II promoter
  178. regulation of transcription, DNA-dependent
  179. regulation of transmission of nerve impulse
  180. renal system development
  181. retinal ganglion cell axon guidance
  182. RNA biosynthetic process
  183. RNA metabolic process
  184. sensory organ development
  185. single-multicellular organism process
  186. single-organism behavior
  187. single-organism developmental process
  188. smoothened signaling pathway
  189. synapse assembly
  190. synapse organization
  191. synaptic transmission
  192. system development
  193. system process
  194. telencephalon development
  195. tissue morphogenesis
  196. transcription, DNA-dependent
  197. transmission of nerve impulse

Pathway Associations

This stage is enriched for 112 KEGG pathways. Scroll to view entire list.

  1. Acute myeloid leukemia
  2. Adipocytokine signaling pathway
  3. African trypanosomiasis
  4. Aldosterone-regulated sodium reabsorption
  5. Allograft rejection
  6. Alzheimer's disease
  7. Amoebiasis
  8. Amyotrophic lateral sclerosis (ALS)
  9. Antigen processing and presentation
  10. Apoptosis
  11. Arrhythmogenic right ventricular cardiomyopathy (A
  12. Asthma
  13. Autoimmune thyroid disease
  14. Axon guidance
  15. B cell receptor signaling pathway
  16. Bacterial invasion of epithelial cells
  17. Basal cell carcinoma
  18. Bile secretion
  19. Bladder cancer
  20. Calcium signaling pathway
  21. Carbohydrate digestion and absorption
  22. Cell cycle
  23. Chagas disease (American trypanosomiasis)
  24. Chemokine signaling pathway
  25. Chronic myeloid leukemia
  26. Circadian rhythm - mammal
  27. Colorectal cancer
  28. Complement and coagulation cascades
  29. Cytokine-cytokine receptor interaction
  30. Cytosolic DNA-sensing pathway
  31. Dilated cardiomyopathy
  32. Dorso-ventral axis formation
  33. ECM-receptor interaction
  34. Endometrial cancer
  35. Epithelial cell signaling in Helicobacter pylori i
  36. ErbB signaling pathway
  37. Fc epsilon RI signaling pathway
  38. Fc gamma R-mediated phagocytosis
  39. Focal adhesion
  40. Gap junction
  41. Gastric acid secretion
  42. Glioma
  43. GnRH signaling pathway
  44. Graft-versus-host disease
  45. Hedgehog signaling pathway
  46. Hepatitis C
  47. Huntington's disease
  48. Insulin signaling pathway
  49. Intestinal immune network for IgA production
  50. Jak-STAT signaling pathway
  51. Leishmaniasis
  52. Leukocyte transendothelial migration
  53. Long-term depression
  54. Long-term potentiation
  55. Lysosome
  56. Malaria
  57. MAPK signaling pathway
  58. Maturity onset diabetes of the young
  59. Melanogenesis
  60. Melanoma
  61. mTOR signaling pathway
  62. Natural killer cell mediated cytotoxicity
  63. Neuroactive ligand-receptor interaction
  64. Neurotrophin signaling pathway
  65. NOD-like receptor signaling pathway
  66. Non-small cell lung cancer
  67. Notch signaling pathway
  68. Olfactory transduction
  69. Oocyte meiosis
  70. Osteoclast differentiation
  71. p53 signaling pathway
  72. Pancreatic cancer
  73. Pancreatic secretion
  74. Parkinson's disease
  75. Pathogenic Escherichia coli infection
  76. Pathways in cancer
  77. Phosphatidylinositol signaling system
  78. Phototransduction
  79. PPAR signaling pathway
  80. Prion diseases
  81. Progesterone-mediated oocyte maturation
  82. Prostate cancer
  83. Protein processing in endoplasmic reticulum
  84. Regulation of actin cytoskeleton
  85. Regulation of autophagy
  86. Renal cell carcinoma
  87. Rheumatoid arthritis
  88. RIG-I-like receptor signaling pathway
  89. RNA degradation
  90. RNA transport
  91. Salivary secretion
  92. Shigellosis
  93. Small cell lung cancer
  94. SNARE interactions in vesicular transport
  95. Staphylococcus aureus infection
  96. Sulfur relay system
  97. Systemic lupus erythematosus
  98. T cell receptor signaling pathway
  99. Taste transduction
  100. TGF-beta signaling pathway
  101. Thyroid cancer
  102. Tight junction
  103. Toll-like receptor signaling pathway
  104. Toxoplasmosis
  105. Type I diabetes mellitus
  106. Type II diabetes mellitus
  107. Vascular smooth muscle contraction
  108. Vasopressin-regulated water reabsorption
  109. VEGF signaling pathway
  110. Vibrio cholerae infection
  111. Viral myocarditis
  112. Wnt signaling pathway

Disease Associations

There are 1 diseases overrepresented in this stage.
  1. Polydactyly